species:   Pimic
pid:       PID1830
parent:    Pmic_miR-7
paralog:   
locus:     scaffold_106:26653-26727
matures:   ['UCCAGCAAGGGGGAAUGGGCU', 'CUCGUUCCCUUUGCUGGACG']
srr:       SRP140518
genome:    /Users/jax/+Genomes/Fungal_genomes/Pimic.Pismi1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Wong-Bajracharya2022-kz.SRP140518.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Wong-Bajracharya2022-kz.SRP140518.cram scaffold_106:26653-26727

0 out of bounds
21 alignments
21 proper strand
15 stranded perfect matches

                ********************************************               
AUUAAAAUUUGCCAAGCGUCCAGCAAGGGGGAAUGGGCUACUCGUUCCCUUUGCUGGACGCUUGGCGUCGCCCAC
..........((((((((((((((((((((.((((((...)))))))))))))))))))))))))).........
------------------UCCAGCAAGGGGGAAUGGGCU------------------------------------ l=21 a=13 c
----------------------------------------CUCGUUCCCUUUGCUGGACG--------------- l=20 a=0 c*
------------------UCCAGCAAGGGGGAAUGGGCU------------------------------------ l=21 a=13 ma
----------------------------------------CUCGUUCCCUUUGCUGGACG--------------- l=20 a=0 ma*

------------------UCCAGCAAGGGGGAAUGGGCU------------------------------------ l=21 a=13 (c,ma)
------------------UCCAGCAAGGGGGAAUGGGCUA----------------------------------- l=22 a=1 
------------------UCCAGCAAGGGGGAAUGGGCUACUC-------------------------------- l=25 a=1 
--------------------------------------UACUCGUUCCCUUUGCcGG------------------ l=19 a=1 
---------------------------------------ACUCGUUCCCUUUGCcGGACG--------------- l=21 a=2 
----------------------------------------CUCGUUCCCUUUGCcGGACG--------------- l=20 a=3 

mb-01011
ax-1011011
ku-01
ss-111111111110
fn-111
